3D structure

PDB id
4V5M (explore in PDB, NAKB, or RNA 3D Hub)
Description
tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.8 Å

Loop

Sequence
UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
4V5M|1|BA|U|2076, 4V5M|1|BA|A|2388, 4V5M|1|BA|U|2390, 4V5M|1|BA|G|2428, 4V5M|1|BA|A|2430
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V5M|1|BA|U|2074
4V5M|1|BA|U|2075
4V5M|1|BA|U|2076
4V5M|1|BA|A|2077
*
4V5M|1|BA|U|2243
4V5M|1|BA|U|2244
4V5M|1|BA|U|2245
4V5M|1|BA|G|2246
*
4V5M|1|BA|C|2258
4V5M|1|BA|G|2259
*
4V5M|1|BA|C|2281
4V5M|1|BA|G|2282
4V5M|1|BA|C|2283
4V5M|1|BA|C|2284
*
4V5M|1|BA|G|2384
4V5M|1|BA|C|2385
4V5M|1|BA|C|2386
4V5M|1|BA|U|2387
4V5M|1|BA|A|2388
4V5M|1|BA|G|2389
4V5M|1|BA|U|2390
4V5M|1|BA|G|2391
4V5M|1|BA|A|2392
4V5M|1|BA|A|2393
4V5M|1|BA|C|2394
4V5M|1|BA|C|2395
*
4V5M|1|BA|G|2421
4V5M|1|BA|A|2422
4V5M|1|BA|U|2423
4V5M|1|BA|C|2424
4V5M|1|BA|A|2425
4V5M|1|BA|A|2426
4V5M|1|BA|C|2427
4V5M|1|BA|G|2428
4V5M|1|BA|G|2429
4V5M|1|BA|A|2430
4V5M|1|BA|U|2431
4V5M|1|BA|A|2432
4V5M|1|BA|A|2433
4V5M|1|BA|A|2434
4V5M|1|BA|A|2435

Current chains

Chain BA
23S RIBOSOMAL RNA

Nearby chains

Chain AV
Transfer RNA; tRNA
Chain B0
50S RIBOSOMAL PROTEIN L27
Chain B1
50S RIBOSOMAL PROTEIN L28
Chain B6
50S RIBOSOMAL PROTEIN L33
Chain B8
50S RIBOSOMAL PROTEIN L35
Chain BD
50S RIBOSOMAL PROTEIN L2
Chain BP
50S RIBOSOMAL PROTEIN L15

Coloring options:

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