J6_4V65_001

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUUCC*GGAGCAG*CUAAAUAC

Length

40 nucleotides

Bulged bases

4V65|1|BB|A|222, 4V65|1|BB|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V65|1|BB|G|45
4V65|1|BB|G|46
*
4V65|1|BB|C|179
4V65|1|BB|G|180
4V65|1|BB|A|181
4V65|1|BB|A|182
4V65|1|BB|C|183
*
4V65|1|BB|G|214
4V65|1|BB|G|215
4V65|1|BB|A|216
4V65|1|BB|A|217
4V65|1|BB|A|218
4V65|1|BB|A|219
4V65|1|BB|G|220
4V65|1|BB|A|221
4V65|1|BB|A|222
4V65|1|BB|A|223
4V65|1|BB|U|224
*
4V65|1|BB|A|231
4V65|1|BB|G|232
4V65|1|BB|A|233
4V65|1|BB|U|234
4V65|1|BB|U|235
4V65|1|BB|C|236
4V65|1|BB|C|237
*
4V65|1|BB|G|260
4V65|1|BB|G|261
4V65|1|BB|A|262
4V65|1|BB|G|263
4V65|1|BB|C|264
4V65|1|BB|A|265
4V65|1|BB|G|266
*
4V65|1|BB|C|426
4V65|1|BB|U|427
4V65|1|BB|A|428
4V65|1|BB|A|429
4V65|1|BB|A|430
4V65|1|BB|U|431
4V65|1|BB|A|432
4V65|1|BB|C|433

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L15

Chain BV

50S ribosomal protein L34