J6_4V66_001

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CGACUAAGCGUAC*GUACGUACAA*UACC*GGCGCUG*CC*GG

Length

38 nucleotides

Bulged bases

4V66|1|BB|A|10, 4V66|1|BB|C|11, 4V66|1|BB|U|12, 4V66|1|BB|C|527

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V66|1|BB|C|8
4V66|1|BB|G|9
4V66|1|BB|A|10
4V66|1|BB|C|11
4V66|1|BB|U|12
4V66|1|BB|A|13
4V66|1|BB|A|14
4V66|1|BB|G|15
4V66|1|BB|C|16
4V66|1|BB|G|17
4V66|1|BB|U|18
4V66|1|BB|A|19
4V66|1|BB|C|20
*
4V66|1|BB|G|520
4V66|1|BB|U|521
4V66|1|BB|A|522
4V66|1|BB|C|523
4V66|1|BB|G|524
4V66|1|BB|U|525
4V66|1|BB|A|526
4V66|1|BB|C|527
4V66|1|BB|A|528
4V66|1|BB|A|529
*
4V66|1|BB|U|2041
4V66|1|BB|A|2042
4V66|1|BB|C|2043
4V66|1|BB|C|2044
*
4V66|1|BB|G|2624
4V66|1|BB|G|2625
4V66|1|BB|C|2626
4V66|1|BB|G|2627
4V66|1|BB|C|2628
4V66|1|BB|U|2629
4V66|1|BB|G|2630
*
4V66|1|BB|C|2788
4V66|1|BB|C|2789
*
4V66|1|BB|G|2894
4V66|1|BB|G|2895

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B6

50S ribosomal protein L13

Chain BJ

50S ribosomal protein L20

Chain BL

50S ribosomal protein L22

Chain BT

50S ribosomal protein L32

Chain BY

50S ribosomal protein L3