J6_4V6I_001
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- AGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAU*AU
- Length
- 36 nucleotides
- Bulged bases
- 4V6I|1|DA|A|67
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6I|1|DA|A|23
4V6I|1|DA|G|24
4V6I|1|DA|U|25
4V6I|1|DA|A|26
4V6I|1|DA|C|27
*
4V6I|1|DA|G|58
4V6I|1|DA|G|59
4V6I|1|DA|A|60
4V6I|1|DA|A|61
4V6I|1|DA|A|62
4V6I|1|DA|A|63
4V6I|1|DA|G|64
4V6I|1|DA|A|65
4V6I|1|DA|A|66
4V6I|1|DA|A|67
4V6I|1|DA|C|68
*
4V6I|1|DA|G|75
4V6I|1|DA|G|76
4V6I|1|DA|A|77
4V6I|1|DA|U|78
4V6I|1|DA|U|79
*
4V6I|1|DA|A|106
4V6I|1|DA|A|107
4V6I|1|DA|A|108
4V6I|1|DA|A|109
4V6I|1|DA|G|110
*
4V6I|1|DA|C|321
4V6I|1|DA|U|322
4V6I|1|DA|A|323
4V6I|1|DA|A|324
4V6I|1|DA|A|325
4V6I|1|DA|U|326
4V6I|1|DA|A|327
4V6I|1|DA|U|328
*
4V6I|1|DB|A|33
4V6I|1|DB|U|34
Current chains
- Chain DA
- 25S rRNA
- Chain DB
- 5.8S rRNA
Nearby chains
- Chain BD
- 60S ribosomal protein rpL4 (L4p)
- Chain BL
- 60S ribosomal protein rpL13 (L13e)
- Chain BO
- 60S ribosomal protein rpL28 (L15p)
- Chain BP
- 60S ribosomal protein rpL15 (L15e)
- Chain Bc
- 60S ribosomal protein rpL35 (L29p)
- Chain Bl
- 60S ribosomal protein rpL37 (L37e)
Coloring options: