J6_4V6L_001

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

4V6L|1|BB|A|223, 4V6L|1|BB|U|431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6L|1|BB|G|45
4V6L|1|BB|G|46
*
4V6L|1|BB|C|179
4V6L|1|BB|G|180
4V6L|1|BB|A|181
4V6L|1|BB|A|182
4V6L|1|BB|C|183
*
4V6L|1|BB|G|214
4V6L|1|BB|G|215
4V6L|1|BB|A|216
4V6L|1|BB|A|217
4V6L|1|BB|A|218
4V6L|1|BB|A|219
4V6L|1|BB|G|220
4V6L|1|BB|A|221
4V6L|1|BB|A|222
4V6L|1|BB|A|223
4V6L|1|BB|U|224
*
4V6L|1|BB|A|231
4V6L|1|BB|G|232
4V6L|1|BB|A|233
4V6L|1|BB|U|234
4V6L|1|BB|U|235
*
4V6L|1|BB|A|262
4V6L|1|BB|G|263
4V6L|1|BB|C|264
4V6L|1|BB|A|265
4V6L|1|BB|G|266
*
4V6L|1|BB|C|426
4V6L|1|BB|U|427
4V6L|1|BB|A|428
4V6L|1|BB|A|429
4V6L|1|BB|A|430
4V6L|1|BB|U|431
4V6L|1|BB|A|432
4V6L|1|BB|C|433

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain Be

50S ribosomal protein L34