J6_4V6M_001

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

4V6M|1|B8|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6M|1|B8|G|45
4V6M|1|B8|G|46
*
4V6M|1|B8|C|179
4V6M|1|B8|G|180
4V6M|1|B8|A|181
4V6M|1|B8|A|182
4V6M|1|B8|C|183
*
4V6M|1|B8|G|214
4V6M|1|B8|G|215
4V6M|1|B8|A|216
4V6M|1|B8|A|217
4V6M|1|B8|A|218
4V6M|1|B8|A|219
4V6M|1|B8|G|220
4V6M|1|B8|A|221
4V6M|1|B8|A|222
4V6M|1|B8|A|223
4V6M|1|B8|U|224
*
4V6M|1|B8|A|231
4V6M|1|B8|G|232
4V6M|1|B8|A|233
4V6M|1|B8|U|234
4V6M|1|B8|U|235
*
4V6M|1|B8|A|262
4V6M|1|B8|G|263
4V6M|1|B8|C|264
4V6M|1|B8|A|265
4V6M|1|B8|G|266
*
4V6M|1|B8|C|426
4V6M|1|B8|U|427
4V6M|1|B8|A|428
4V6M|1|B8|A|429
4V6M|1|B8|A|430
4V6M|1|B8|U|431
4V6M|1|B8|A|432
4V6M|1|B8|C|433

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain B2

50S ribosomal protein L34