J6_4V6O_001

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

4V6O|1|BB|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6O|1|BB|G|45
4V6O|1|BB|G|46
*
4V6O|1|BB|C|179
4V6O|1|BB|G|180
4V6O|1|BB|A|181
4V6O|1|BB|A|182
4V6O|1|BB|C|183
*
4V6O|1|BB|G|214
4V6O|1|BB|G|215
4V6O|1|BB|A|216
4V6O|1|BB|A|217
4V6O|1|BB|A|218
4V6O|1|BB|A|219
4V6O|1|BB|G|220
4V6O|1|BB|A|221
4V6O|1|BB|A|222
4V6O|1|BB|A|223
4V6O|1|BB|U|224
*
4V6O|1|BB|A|231
4V6O|1|BB|G|232
4V6O|1|BB|A|233
4V6O|1|BB|U|234
4V6O|1|BB|U|235
*
4V6O|1|BB|A|262
4V6O|1|BB|G|263
4V6O|1|BB|C|264
4V6O|1|BB|A|265
4V6O|1|BB|G|266
*
4V6O|1|BB|C|426
4V6O|1|BB|U|427
4V6O|1|BB|A|428
4V6O|1|BB|A|429
4V6O|1|BB|A|430
4V6O|1|BB|U|431
4V6O|1|BB|A|432
4V6O|1|BB|C|433

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L34

Chain BI

50S ribosomal protein L9