J6_4V6P_001

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

4V6P|1|BB|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6P|1|BB|G|45
4V6P|1|BB|G|46
*
4V6P|1|BB|C|179
4V6P|1|BB|G|180
4V6P|1|BB|A|181
4V6P|1|BB|A|182
4V6P|1|BB|C|183
*
4V6P|1|BB|G|214
4V6P|1|BB|G|215
4V6P|1|BB|A|216
4V6P|1|BB|A|217
4V6P|1|BB|A|218
4V6P|1|BB|A|219
4V6P|1|BB|G|220
4V6P|1|BB|A|221
4V6P|1|BB|A|222
4V6P|1|BB|A|223
4V6P|1|BB|U|224
*
4V6P|1|BB|A|231
4V6P|1|BB|G|232
4V6P|1|BB|A|233
4V6P|1|BB|U|234
4V6P|1|BB|U|235
*
4V6P|1|BB|A|262
4V6P|1|BB|G|263
4V6P|1|BB|C|264
4V6P|1|BB|A|265
4V6P|1|BB|G|266
*
4V6P|1|BB|C|426
4V6P|1|BB|U|427
4V6P|1|BB|A|428
4V6P|1|BB|A|429
4V6P|1|BB|A|430
4V6P|1|BB|U|431
4V6P|1|BB|A|432
4V6P|1|BB|C|433

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L34