J6_4V6Q_002

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GG*CGAACC*GAGGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

39 nucleotides

Bulged bases

4V6Q|1|BB|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6Q|1|BB|G|45
4V6Q|1|BB|G|46
*
4V6Q|1|BB|C|179
4V6Q|1|BB|G|180
4V6Q|1|BB|A|181
4V6Q|1|BB|A|182
4V6Q|1|BB|C|183
4V6Q|1|BB|C|184
*
4V6Q|1|BB|G|212
4V6Q|1|BB|A|213
4V6Q|1|BB|G|214
4V6Q|1|BB|G|215
4V6Q|1|BB|A|216
4V6Q|1|BB|A|217
4V6Q|1|BB|A|218
4V6Q|1|BB|A|219
4V6Q|1|BB|G|220
4V6Q|1|BB|A|221
4V6Q|1|BB|A|222
4V6Q|1|BB|A|223
4V6Q|1|BB|U|224
*
4V6Q|1|BB|A|231
4V6Q|1|BB|G|232
4V6Q|1|BB|A|233
4V6Q|1|BB|U|234
4V6Q|1|BB|U|235
*
4V6Q|1|BB|A|262
4V6Q|1|BB|G|263
4V6Q|1|BB|C|264
4V6Q|1|BB|A|265
4V6Q|1|BB|G|266
*
4V6Q|1|BB|C|426
4V6Q|1|BB|U|427
4V6Q|1|BB|A|428
4V6Q|1|BB|A|429
4V6Q|1|BB|A|430
4V6Q|1|BB|U|431
4V6Q|1|BB|A|432
4V6Q|1|BB|C|433

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L34