J6_4V6S_001

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

4V6S|1|AB|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6S|1|AB|G|45
4V6S|1|AB|G|46
*
4V6S|1|AB|C|179
4V6S|1|AB|G|180
4V6S|1|AB|A|181
4V6S|1|AB|A|182
4V6S|1|AB|C|183
*
4V6S|1|AB|G|214
4V6S|1|AB|G|215
4V6S|1|AB|A|216
4V6S|1|AB|A|217
4V6S|1|AB|A|218
4V6S|1|AB|A|219
4V6S|1|AB|G|220
4V6S|1|AB|A|221
4V6S|1|AB|A|222
4V6S|1|AB|A|223
4V6S|1|AB|U|224
*
4V6S|1|AB|A|231
4V6S|1|AB|G|232
4V6S|1|AB|A|233
4V6S|1|AB|U|234
4V6S|1|AB|U|235
*
4V6S|1|AB|A|262
4V6S|1|AB|G|263
4V6S|1|AB|C|264
4V6S|1|AB|A|265
4V6S|1|AB|G|266
*
4V6S|1|AB|C|426
4V6S|1|AB|U|427
4V6S|1|AB|A|428
4V6S|1|AB|A|429
4V6S|1|AB|A|430
4V6S|1|AB|U|431
4V6S|1|AB|A|432
4V6S|1|AB|C|433

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L34