3D structure

PDB id
4V6T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
Experimental method
ELECTRON MICROSCOPY
Resolution
8.3 Å

Loop

Sequence
GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC
Length
36 nucleotides
Bulged bases
4V6T|1|BA|A|223
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V6T|1|BA|G|45
4V6T|1|BA|G|46
*
4V6T|1|BA|C|179
4V6T|1|BA|G|180
4V6T|1|BA|A|181
4V6T|1|BA|A|182
4V6T|1|BA|C|183
*
4V6T|1|BA|G|214
4V6T|1|BA|G|215
4V6T|1|BA|A|216
4V6T|1|BA|A|217
4V6T|1|BA|A|218
4V6T|1|BA|A|219
4V6T|1|BA|G|220
4V6T|1|BA|A|221
4V6T|1|BA|A|222
4V6T|1|BA|A|223
4V6T|1|BA|U|224
*
4V6T|1|BA|A|231
4V6T|1|BA|G|232
4V6T|1|BA|A|233
4V6T|1|BA|U|234
4V6T|1|BA|U|235
*
4V6T|1|BA|A|262
4V6T|1|BA|G|263
4V6T|1|BA|C|264
4V6T|1|BA|A|265
4V6T|1|BA|G|266
*
4V6T|1|BA|C|426
4V6T|1|BA|U|427
4V6T|1|BA|A|428
4V6T|1|BA|A|429
4V6T|1|BA|A|430
4V6T|1|BA|U|431
4V6T|1|BA|A|432
4V6T|1|BA|C|433

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B2
50S ribosomal protein L34

Coloring options:

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