J6_4V6T_002

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

4V6T|1|BA|U|2076, 4V6T|1|BA|A|2388, 4V6T|1|BA|U|2390, 4V6T|1|BA|G|2428, 4V6T|1|BA|A|2430, 4V6T|1|BA|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6T|1|BA|U|2074
4V6T|1|BA|U|2075
4V6T|1|BA|U|2076
4V6T|1|BA|A|2077
*
4V6T|1|BA|U|2243
4V6T|1|BA|U|2244
4V6T|1|BA|U|2245
4V6T|1|BA|G|2246
*
4V6T|1|BA|C|2258
4V6T|1|BA|U|2259
*
4V6T|1|BA|A|2281
4V6T|1|BA|G|2282
4V6T|1|BA|C|2283
4V6T|1|BA|A|2284
*
4V6T|1|BA|U|2384
4V6T|1|BA|C|2385
4V6T|1|BA|A|2386
4V6T|1|BA|U|2387
4V6T|1|BA|A|2388
4V6T|1|BA|G|2389
4V6T|1|BA|U|2390
4V6T|1|BA|G|2391
4V6T|1|BA|A|2392
4V6T|1|BA|U|2393
4V6T|1|BA|C|2394
4V6T|1|BA|C|2395
*
4V6T|1|BA|G|2421
4V6T|1|BA|C|2422
4V6T|1|BA|U|2423
4V6T|1|BA|C|2424
4V6T|1|BA|A|2425
4V6T|1|BA|A|2426
4V6T|1|BA|C|2427
4V6T|1|BA|G|2428
4V6T|1|BA|G|2429
4V6T|1|BA|A|2430
4V6T|1|BA|U|2431
4V6T|1|BA|A|2432
4V6T|1|BA|A|2433
4V6T|1|BA|A|2434
4V6T|1|BA|A|2435

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AX

Transfer RNA; tRNA

Chain B1

50S ribosomal protein L33

Chain B3

50S ribosomal protein L35

Chain BC

50S ribosomal protein L2

Chain BL

50S ribosomal protein L15

Chain BW

50S ribosomal protein L27

Chain BX

50S ribosomal protein L28