J6_4V6X_001
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GGCGACC*GAGGAGAAGAAAC*GGAUU*AAGAG*CUAAAUACCGG*CGUC
- Length
- 45 nucleotides
- Bulged bases
- 4V6X|1|A5|A|66, 4V6X|1|A5|C|340, 4V6X|1|A8|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6X|1|A5|G|21
4V6X|1|A5|G|22
4V6X|1|A5|C|23
4V6X|1|A5|G|24
4V6X|1|A5|A|25
4V6X|1|A5|C|26
4V6X|1|A5|C|27
*
4V6X|1|A5|G|55
4V6X|1|A5|A|56
4V6X|1|A5|G|57
4V6X|1|A5|G|58
4V6X|1|A5|A|59
4V6X|1|A5|G|60
4V6X|1|A5|A|61
4V6X|1|A5|A|62
4V6X|1|A5|G|63
4V6X|1|A5|A|64
4V6X|1|A5|A|65
4V6X|1|A5|A|66
4V6X|1|A5|C|67
*
4V6X|1|A5|G|74
4V6X|1|A5|G|75
4V6X|1|A5|A|76
4V6X|1|A5|U|77
4V6X|1|A5|U|78
*
4V6X|1|A5|A|105
4V6X|1|A5|A|106
4V6X|1|A5|G|107
4V6X|1|A5|A|108
4V6X|1|A5|G|109
*
4V6X|1|A5|C|332
4V6X|1|A5|U|333
4V6X|1|A5|A|334
4V6X|1|A5|A|335
4V6X|1|A5|A|336
4V6X|1|A5|U|337
4V6X|1|A5|A|338
4V6X|1|A5|C|339
4V6X|1|A5|C|340
4V6X|1|A5|G|341
4V6X|1|A5|G|342
*
4V6X|1|A8|C|32
4V6X|1|A8|G|33
4V6X|1|A8|U|34
4V6X|1|A8|C|35
Current chains
- Chain A5
- 28S ribosomal RNA
- Chain A8
- 5.8S ribosomal RNA
Nearby chains
- Chain CC
- 60S ribosomal protein L4
- Chain CL
- 60S ribosomal protein L13
- Chain CN
- 60S ribosomal protein L15
- Chain Ch
- 60S ribosomal protein L35
- Chain Ci
- 60S ribosomal protein L36
- Chain Cj
- 60S ribosomal protein L37
Coloring options: