Loop J6_4V7E

3D structure

PDB id: 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
Description: Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.5 Å

Loop

Sequence: GGACUAC*GAGGAGAAGAAAC*GGAUU*AGCAG*CUAAAUACAGG*CAUC
Length: 45 nucleotides
Bulged bases: 4V7E|1|Aa|A|66, 4V7E|1|Aa|A|327
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V7E|1|Aa|G|21
4V7E|1|Aa|G|22
4V7E|1|Aa|A|23
4V7E|1|Aa|C|24
4V7E|1|Aa|U|25
4V7E|1|Aa|A|26
4V7E|1|Aa|C|27
*
4V7E|1|Aa|G|55
4V7E|1|Aa|A|56
4V7E|1|Aa|G|57
4V7E|1|Aa|G|58
4V7E|1|Aa|A|59
4V7E|1|Aa|G|60
4V7E|1|Aa|A|61
4V7E|1|Aa|A|62
4V7E|1|Aa|G|63
4V7E|1|Aa|A|64
4V7E|1|Aa|A|65
4V7E|1|Aa|A|66
4V7E|1|Aa|C|67
*
4V7E|1|Aa|G|74
4V7E|1|Aa|G|75
4V7E|1|Aa|A|76
4V7E|1|Aa|U|77
4V7E|1|Aa|U|78
*
4V7E|1|Aa|A|105
4V7E|1|Aa|G|106
4V7E|1|Aa|C|107
4V7E|1|Aa|A|108
4V7E|1|Aa|G|109
*
4V7E|1|Aa|C|319
4V7E|1|Aa|U|320
4V7E|1|Aa|A|321
4V7E|1|Aa|A|322
4V7E|1|Aa|A|323
4V7E|1|Aa|U|324
4V7E|1|Aa|A|325
4V7E|1|Aa|C|326
4V7E|1|Aa|A|327
4V7E|1|Aa|G|328
4V7E|1|Aa|G|329
*
4V7E|1|Ac|C|32
4V7E|1|Ac|A|33
4V7E|1|Ac|U|34
4V7E|1|Ac|C|35

Current chains

Chain Aa: 60S ribosomal RNA
Chain Ac: 5.8S ribosomal RNA

Nearby chains

Chain CC: 60S ribosomal protein L4
Chain CL: 60S ribosomal protein L13E
Chain CN: 60S ribosomal protein L15E
Chain Ch: 60S ribosomal protein L29
Chain Cj: 60S ribosomal protein L37E

J6_4V7E_001