J6_4V7E_002
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- UGGACCUUG*UCGCGCUCCUAGCCUUAAUUG*CGUGUUUCCGGCAUCG*CAUCAUAGGA*UAAUGAUUAAUA*UA
- Length
- 70 nucleotides
- Bulged bases
- 4V7E|1|Ad|U|643, 4V7E|1|Ad|C|707, 4V7E|1|Ad|G|708, 4V7E|1|Ad|A|722, 4V7E|1|Ad|U|819, 4V7E|1|Ad|G|821, 4V7E|1|Ad|A|861, 4V7E|1|Ad|U|869
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V7E|1|Ad|U|637
4V7E|1|Ad|G|638
4V7E|1|Ad|G|639
4V7E|1|Ad|A|640
4V7E|1|Ad|C|641
4V7E|1|Ad|C|642
4V7E|1|Ad|U|643
4V7E|1|Ad|U|644
4V7E|1|Ad|G|645
*
4V7E|1|Ad|U|706
4V7E|1|Ad|C|707
4V7E|1|Ad|G|708
4V7E|1|Ad|C|709
4V7E|1|Ad|G|710
4V7E|1|Ad|C|711
4V7E|1|Ad|U|712
4V7E|1|Ad|C|713
4V7E|1|Ad|C|714
4V7E|1|Ad|U|715
4V7E|1|Ad|A|716
4V7E|1|Ad|G|717
4V7E|1|Ad|C|718
4V7E|1|Ad|C|719
4V7E|1|Ad|U|720
4V7E|1|Ad|U|721
4V7E|1|Ad|A|722
4V7E|1|Ad|A|723
4V7E|1|Ad|U|724
4V7E|1|Ad|U|725
4V7E|1|Ad|G|726
*
4V7E|1|Ad|C|734
4V7E|1|Ad|G|735
4V7E|1|Ad|U|736
4V7E|1|Ad|G|737
4V7E|1|Ad|U|738
4V7E|1|Ad|U|739
4V7E|1|Ad|U|740
4V7E|1|Ad|C|741
4V7E|1|Ad|C|742
4V7E|1|Ad|G|743
4V7E|1|Ad|G|744
4V7E|1|Ad|C|745
4V7E|1|Ad|A|746
4V7E|1|Ad|U|747
4V7E|1|Ad|C|748
4V7E|1|Ad|G|749
*
4V7E|1|Ad|C|814
4V7E|1|Ad|A|815
4V7E|1|Ad|U|816
4V7E|1|Ad|C|817
4V7E|1|Ad|A|818
4V7E|1|Ad|U|819
4V7E|1|Ad|A|820
4V7E|1|Ad|G|821
4V7E|1|Ad|G|822
4V7E|1|Ad|A|823
*
4V7E|1|Ad|U|859
4V7E|1|Ad|A|860
4V7E|1|Ad|A|861
4V7E|1|Ad|U|862
4V7E|1|Ad|G|863
4V7E|1|Ad|A|864
4V7E|1|Ad|U|865
4V7E|1|Ad|U|866
4V7E|1|Ad|A|867
4V7E|1|Ad|A|868
4V7E|1|Ad|U|869
4V7E|1|Ad|A|870
*
4V7E|1|Ad|U|970
4V7E|1|Ad|A|971
Current chains
- Chain Ad
- 18S ribosomal RNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4E
- Chain BG
- 40S ribosomal protein S6
- Chain BH
- 40S ribosomal protein S7E
- Chain BL
- 40S ribosomal protein S17
- Chain BN
- 40S ribosomal protein S15
- Chain BW
- 40S ribosomal protein S8
- Chain BX
- 40S ribosomal protein S12
- Chain Bb
- 40S ribosomal protein S27E
- Chain CR
- 60S ribosomal protein L19E
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