J6_4V7I_002

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

4V7I|1|A8|U|2076, 4V7I|1|A8|G|2428, 4V7I|1|A8|A|2430

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7I|1|A8|U|2074
4V7I|1|A8|U|2075
4V7I|1|A8|U|2076
4V7I|1|A8|A|2077
*
4V7I|1|A8|U|2243
4V7I|1|A8|U|2244
4V7I|1|A8|U|2245
4V7I|1|A8|G|2246
*
4V7I|1|A8|C|2258
4V7I|1|A8|U|2259
*
4V7I|1|A8|A|2281
4V7I|1|A8|G|2282
4V7I|1|A8|C|2283
4V7I|1|A8|A|2284
*
4V7I|1|A8|U|2384
4V7I|1|A8|C|2385
4V7I|1|A8|A|2386
4V7I|1|A8|U|2387
4V7I|1|A8|A|2388
4V7I|1|A8|G|2389
4V7I|1|A8|U|2390
4V7I|1|A8|G|2391
4V7I|1|A8|A|2392
4V7I|1|A8|U|2393
4V7I|1|A8|C|2394
4V7I|1|A8|C|2395
*
4V7I|1|A8|G|2421
4V7I|1|A8|C|2422
4V7I|1|A8|U|2423
4V7I|1|A8|C|2424
4V7I|1|A8|A|2425
4V7I|1|A8|A|2426
4V7I|1|A8|C|2427
4V7I|1|A8|G|2428
4V7I|1|A8|G|2429
4V7I|1|A8|A|2430
4V7I|1|A8|U|2431
4V7I|1|A8|A|2432
4V7I|1|A8|A|2433
4V7I|1|A8|A|2434
4V7I|1|A8|A|2435

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L33

Chain A3

50S ribosomal protein L35

Chain A6

50S ribosomal protein L2

Chain AL

50S ribosomal protein L15

Chain AW

50S ribosomal protein L27

Chain AX

50S ribosomal protein L28