3D structure

PDB id
4V8E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC
Length
36 nucleotides
Bulged bases
4V8E|1|CA|A|213
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V8E|1|CA|G|44
4V8E|1|CA|C|45
*
4V8E|1|CA|G|169
4V8E|1|CA|G|170
4V8E|1|CA|A|171
4V8E|1|CA|A|172
4V8E|1|CA|C|173
*
4V8E|1|CA|G|204
4V8E|1|CA|G|205
4V8E|1|CA|A|206
4V8E|1|CA|G|207
4V8E|1|CA|A|208
4V8E|1|CA|G|209
4V8E|1|CA|G|210
4V8E|1|CA|A|211
4V8E|1|CA|A|212
4V8E|1|CA|A|213
4V8E|1|CA|G|214
*
4V8E|1|CA|C|221
4V8E|1|CA|G|222
4V8E|1|CA|A|223
4V8E|1|CA|C|224
4V8E|1|CA|U|225
*
4V8E|1|CA|A|252
4V8E|1|CA|C|253
4V8E|1|CA|C|254
4V8E|1|CA|A|255
4V8E|1|CA|G|256
*
4V8E|1|CA|C|454
4V8E|1|CA|U|455
4V8E|1|CA|A|456
4V8E|1|CA|A|457
4V8E|1|CA|G|458
4V8E|1|CA|U|459
4V8E|1|CA|A|460
4V8E|1|CA|C|461

Current chains

Chain CA
RNA (2912-MER)

Nearby chains

Chain C7
50S ribosomal protein L34

Coloring options:

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