J6_4V8P_001
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GAUUAC*GGAAAAGAAAC*GGAUA*UAAAG*CUAAAUAUAC*GAC
- Length
- 40 nucleotides
- Bulged bases
- 4V8P|1|A1|A|65, 4V8P|1|A1|A|328, 4V8P|1|B2|A|37
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8P|1|A1|G|20
4V8P|1|A1|A|21
4V8P|1|A1|U|22
4V8P|1|A1|U|23
4V8P|1|A1|A|24
4V8P|1|A1|C|25
*
4V8P|1|A1|G|56
4V8P|1|A1|G|57
4V8P|1|A1|A|58
4V8P|1|A1|A|59
4V8P|1|A1|A|60
4V8P|1|A1|A|61
4V8P|1|A1|G|62
4V8P|1|A1|A|63
4V8P|1|A1|A|64
4V8P|1|A1|A|65
4V8P|1|A1|C|66
*
4V8P|1|A1|G|73
4V8P|1|A1|G|74
4V8P|1|A1|A|75
4V8P|1|A1|U|76
4V8P|1|A1|A|77
*
4V8P|1|A1|U|104
4V8P|1|A1|A|105
4V8P|1|A1|A|106
4V8P|1|A1|A|107
4V8P|1|A1|G|108
*
4V8P|1|A1|C|320
4V8P|1|A1|U|321
4V8P|1|A1|A|322
4V8P|1|A1|A|323
4V8P|1|A1|A|324
4V8P|1|A1|U|325
4V8P|1|A1|A|326
4V8P|1|A1|U|327
4V8P|1|A1|A|328
4V8P|1|A1|C|329
*
4V8P|1|B2|G|36
4V8P|1|B2|A|37
4V8P|1|B2|C|38
Current chains
- Chain A1
- 26S RRNA
- Chain B2
- 5.8S RRNA
Nearby chains
- Chain AA
- RIBOSOMAL PROTEIN L37
- Chain AQ
- 60S RIBOSOMAL PROTEIN L36
- Chain AU
- RPL13
- Chain BC
- RPL4
- Chain BL
- RIBOSOMAL PROTEIN L15
- Chain BU
- RPL35
Coloring options: