J6_4V8P_004

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UUGA*UUUG*UG*CGUC*GCCUAUCGAUCC*GGUGUCAGAAAA

Length

38 nucleotides

Bulged bases

4V8P|1|D1|G|2413, 4V8P|1|D1|C|2749, 4V8P|1|D1|A|2787, 4V8P|1|D1|A|2789, 4V8P|1|D1|A|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8P|1|D1|U|2411
4V8P|1|D1|U|2412
4V8P|1|D1|G|2413
4V8P|1|D1|A|2414
*
4V8P|1|D1|U|2600
4V8P|1|D1|U|2601
4V8P|1|D1|U|2602
4V8P|1|D1|G|2603
*
4V8P|1|D1|U|2616
4V8P|1|D1|G|2617
*
4V8P|1|D1|C|2639
4V8P|1|D1|G|2640
4V8P|1|D1|U|2641
4V8P|1|D1|C|2642
*
4V8P|1|D1|G|2743
4V8P|1|D1|C|2744
4V8P|1|D1|C|2745
4V8P|1|D1|U|2746
4V8P|1|D1|A|2747
4V8P|1|D1|U|2748
4V8P|1|D1|C|2749
4V8P|1|D1|G|2750
4V8P|1|D1|A|2751
4V8P|1|D1|U|2752
4V8P|1|D1|C|2753
4V8P|1|D1|C|2754
*
4V8P|1|D1|G|2781
4V8P|1|D1|G|2782
4V8P|1|D1|U|2783
4V8P|1|D1|G|2784
4V8P|1|D1|U|2785
4V8P|1|D1|C|2786
4V8P|1|D1|A|2787
4V8P|1|D1|G|2788
4V8P|1|D1|A|2789
4V8P|1|D1|A|2790
4V8P|1|D1|A|2791
4V8P|1|D1|A|2792

Current chains

Chain D1

26S RRNA

Nearby chains

Chain CA

RPL8

Chain CK

60S RIBOSOMAL PROTEIN L27A

Chain CL

RIBOSOMAL PROTEIN L15

Chain CN

RPL18

Chain CP

60S RIBOSOMAL PROTEIN L21

Chain DC

60S RIBOSOMAL PROTEIN L36A