J6_4V8T_001

3D structure

PDB id

4V8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC

Length

42 nucleotides

Bulged bases

4V8T|1|5|A|67, 4V8T|1|5|U|329, 4V8T|1|8|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8T|1|5|G|22
4V8T|1|5|A|23
4V8T|1|5|G|24
4V8T|1|5|U|25
4V8T|1|5|A|26
4V8T|1|5|C|27
*
4V8T|1|5|G|58
4V8T|1|5|G|59
4V8T|1|5|A|60
4V8T|1|5|A|61
4V8T|1|5|A|62
4V8T|1|5|A|63
4V8T|1|5|G|64
4V8T|1|5|A|65
4V8T|1|5|A|66
4V8T|1|5|A|67
4V8T|1|5|C|68
*
4V8T|1|5|G|75
4V8T|1|5|G|76
4V8T|1|5|A|77
4V8T|1|5|U|78
4V8T|1|5|U|79
*
4V8T|1|5|A|106
4V8T|1|5|A|107
4V8T|1|5|A|108
4V8T|1|5|A|109
4V8T|1|5|G|110
*
4V8T|1|5|C|321
4V8T|1|5|U|322
4V8T|1|5|A|323
4V8T|1|5|A|324
4V8T|1|5|A|325
4V8T|1|5|U|326
4V8T|1|5|A|327
4V8T|1|5|U|328
4V8T|1|5|U|329
4V8T|1|5|G|330
4V8T|1|5|G|331
*
4V8T|1|8|C|32
4V8T|1|8|A|33
4V8T|1|8|U|34
4V8T|1|8|C|35

Current chains

Chain 5

25S RIBOSOMAL RNA

Chain 8

5.8S RIBOSOMAL RNA

Nearby chains

Chain C

60S RIBOSOMAL PROTEIN L4-A

Chain L

60S RIBOSOMAL PROTEIN L13-A

Chain N

60S RIBOSOMAL PROTEIN L15-A

Chain h

60S RIBOSOMAL PROTEIN L35-A

Chain i

60S RIBOSOMAL PROTEIN L36-A

Chain j

60S RIBOSOMAL PROTEIN L37-A