J6_4V8T_002
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 4V8T|1|5|G|2418, 4V8T|1|5|C|2760, 4V8T|1|5|A|2799, 4V8T|1|5|A|2801, 4V8T|1|5|A|2802
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8T|1|5|U|2416
4V8T|1|5|U|2417
4V8T|1|5|G|2418
4V8T|1|5|A|2419
*
4V8T|1|5|U|2611
4V8T|1|5|U|2612
4V8T|1|5|U|2613
4V8T|1|5|G|2614
*
4V8T|1|5|C|2627
4V8T|1|5|A|2628
*
4V8T|1|5|U|2650
4V8T|1|5|G|2651
4V8T|1|5|U|2652
4V8T|1|5|C|2653
*
4V8T|1|5|G|2754
4V8T|1|5|C|2755
4V8T|1|5|C|2756
4V8T|1|5|U|2757
4V8T|1|5|A|2758
4V8T|1|5|U|2759
4V8T|1|5|C|2760
4V8T|1|5|G|2761
4V8T|1|5|A|2762
4V8T|1|5|U|2763
4V8T|1|5|C|2764
4V8T|1|5|C|2765
*
4V8T|1|5|G|2793
4V8T|1|5|G|2794
4V8T|1|5|U|2795
4V8T|1|5|G|2796
4V8T|1|5|C|2797
4V8T|1|5|C|2798
4V8T|1|5|A|2799
4V8T|1|5|G|2800
4V8T|1|5|A|2801
4V8T|1|5|A|2802
4V8T|1|5|A|2803
4V8T|1|5|A|2804
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain A
- 60S RIBOSOMAL PROTEIN L2-B
- Chain N
- 60S RIBOSOMAL PROTEIN L15-A
- Chain Q
- 60S RIBOSOMAL PROTEIN L18-B
- Chain T
- 60S RIBOSOMAL PROTEIN L21-A
- Chain a
- 60S RIBOSOMAL PROTEIN L28
- Chain b
- 60S RIBOSOMAL PROTEIN L29
- Chain o
- 60S RIBOSOMAL PROTEIN L42-A
Coloring options: