3D structure

PDB id
4V91 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length
42 nucleotides
Bulged bases
4V91|1|1|A|67, 4V91|1|1|U|329
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V91|1|1|G|22
4V91|1|1|A|23
4V91|1|1|G|24
4V91|1|1|U|25
4V91|1|1|A|26
4V91|1|1|C|27
*
4V91|1|1|G|58
4V91|1|1|G|59
4V91|1|1|A|60
4V91|1|1|A|61
4V91|1|1|A|62
4V91|1|1|A|63
4V91|1|1|G|64
4V91|1|1|A|65
4V91|1|1|A|66
4V91|1|1|A|67
4V91|1|1|C|68
*
4V91|1|1|G|75
4V91|1|1|G|76
4V91|1|1|A|77
4V91|1|1|U|78
4V91|1|1|U|79
*
4V91|1|1|A|106
4V91|1|1|A|107
4V91|1|1|A|108
4V91|1|1|A|109
4V91|1|1|G|110
*
4V91|1|1|C|321
4V91|1|1|U|322
4V91|1|1|A|323
4V91|1|1|A|324
4V91|1|1|A|325
4V91|1|1|U|326
4V91|1|1|A|327
4V91|1|1|U|328
4V91|1|1|U|329
4V91|1|1|G|330
4V91|1|1|G|331
*
4V91|1|4|C|32
4V91|1|4|A|33
4V91|1|4|U|34
4V91|1|4|C|35

Current chains

Chain 1
25S RRNA
Chain 4
5.8S RRNA

Nearby chains

Chain C
UL4
Chain L
EL13
Chain N
EL15
Chain h
UL29
Chain i
EL36
Chain j
EL37

Coloring options:

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