Loop J6_4V9C

3D structure

PDB id: 4V9C (explore in PDB, NAKB, or RNA 3D Hub)
Description: Allosteric control of the ribosome by small-molecule antibiotics
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å

Loop

Sequence: UUUA*UUUG*CUC*GAGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length: 43 nucleotides
Bulged bases: 4V9C|1|BA|U|2076, 4V9C|1|BA|U|2390, 4V9C|1|BA|G|2428, 4V9C|1|BA|A|2430, 4V9C|1|BA|U|2431
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V9C|1|BA|U|2074
4V9C|1|BA|U|2075
4V9C|1|BA|U|2076
4V9C|1|BA|A|2077
*
4V9C|1|BA|U|2243
4V9C|1|BA|U|2244
4V9C|1|BA|U|2245
4V9C|1|BA|G|2246
*
4V9C|1|BA|C|2258
4V9C|1|BA|U|2259
4V9C|1|BA|C|2260
*
4V9C|1|BA|G|2280
4V9C|1|BA|A|2281
4V9C|1|BA|G|2282
4V9C|1|BA|C|2283
4V9C|1|BA|A|2284
*
4V9C|1|BA|U|2384
4V9C|1|BA|C|2385
4V9C|1|BA|A|2386
4V9C|1|BA|U|2387
4V9C|1|BA|A|2388
4V9C|1|BA|G|2389
4V9C|1|BA|U|2390
4V9C|1|BA|G|2391
4V9C|1|BA|A|2392
4V9C|1|BA|U|2393
4V9C|1|BA|C|2394
4V9C|1|BA|C|2395
*
4V9C|1|BA|G|2421
4V9C|1|BA|C|2422
4V9C|1|BA|U|2423
4V9C|1|BA|C|2424
4V9C|1|BA|A|2425
4V9C|1|BA|A|2426
4V9C|1|BA|C|2427
4V9C|1|BA|G|2428
4V9C|1|BA|G|2429
4V9C|1|BA|A|2430
4V9C|1|BA|U|2431
4V9C|1|BA|A|2432
4V9C|1|BA|A|2433
4V9C|1|BA|A|2434
4V9C|1|BA|A|2435

Current chains

Chain BA: 23S ribosomal RNA

Nearby chains

Chain AV: Transfer RNA; tRNA
Chain B1: 50S ribosomal protein L33
Chain B3: 50S ribosomal protein L35
Chain BC: 50S ribosomal protein L2
Chain BL: 50S ribosomal protein L15
Chain BW: 50S ribosomal protein L27
Chain BX: 50S ribosomal protein L28

J6_4V9C_002