J6_4V9I_003

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V9I|1|DA|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9I|1|DA|G|43
4V9I|1|DA|C|44
*
4V9I|1|DA|G|167
4V9I|1|DA|G|168
4V9I|1|DA|A|169
4V9I|1|DA|A|170
4V9I|1|DA|C|171
*
4V9I|1|DA|G|202
4V9I|1|DA|G|203
4V9I|1|DA|A|204
4V9I|1|DA|G|205
4V9I|1|DA|A|206
4V9I|1|DA|G|207
4V9I|1|DA|G|208
4V9I|1|DA|A|209
4V9I|1|DA|A|210
4V9I|1|DA|A|211
4V9I|1|DA|G|212
*
4V9I|1|DA|C|219
4V9I|1|DA|G|220
4V9I|1|DA|A|221
4V9I|1|DA|C|222
4V9I|1|DA|U|223
*
4V9I|1|DA|A|250
4V9I|1|DA|C|251
4V9I|1|DA|C|252
4V9I|1|DA|A|253
4V9I|1|DA|G|254
*
4V9I|1|DA|C|452
4V9I|1|DA|U|453
4V9I|1|DA|A|454
4V9I|1|DA|A|455
4V9I|1|DA|G|456
4V9I|1|DA|U|457
4V9I|1|DA|A|458
4V9I|1|DA|C|459

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D7

50S ribosomal protein L34