J6_4V9L_003

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V9L|1|DA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9L|1|DA|G|45
4V9L|1|DA|C|46
*
4V9L|1|DA|G|179
4V9L|1|DA|G|180
4V9L|1|DA|A|181
4V9L|1|DA|A|182
4V9L|1|DA|C|183
*
4V9L|1|DA|G|214
4V9L|1|DA|G|215
4V9L|1|DA|A|216
4V9L|1|DA|G|217
4V9L|1|DA|A|218
4V9L|1|DA|G|219
4V9L|1|DA|G|220
4V9L|1|DA|A|221
4V9L|1|DA|A|222
4V9L|1|DA|A|223
4V9L|1|DA|G|224
*
4V9L|1|DA|C|231
4V9L|1|DA|G|232
4V9L|1|DA|A|233
4V9L|1|DA|C|234
4V9L|1|DA|U|235
*
4V9L|1|DA|A|262
4V9L|1|DA|C|263
4V9L|1|DA|C|264
4V9L|1|DA|A|265
4V9L|1|DA|G|266
*
4V9L|1|DA|C|426
4V9L|1|DA|U|427
4V9L|1|DA|A|428
4V9L|1|DA|A|429
4V9L|1|DA|G|430
4V9L|1|DA|U|431
4V9L|1|DA|A|432
4V9L|1|DA|C|433

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D7

50S ribosomal protein L34