J6_4W21_001

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GACUG*CAAAGCAU*AUGUGAUUUCUG*CGGG*CUCUUAAGGUAG*UGAAUGGAUGAAC

Length

54 nucleotides

Bulged bases

4W21|1|5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|G|3634
4W21|1|5|A|3635
4W21|1|5|C|3636
4W21|1|5|U|3637
4W21|1|5|G|3638
*
4W21|1|5|C|3650
4W21|1|5|A|3651
4W21|1|5|A|3652
4W21|1|5|A|3653
4W21|1|5|G|3654
4W21|1|5|C|3655
4W21|1|5|A|3656
4W21|1|5|U|3657
*
4W21|1|5|A|3687
4W21|1|5|U|3688
4W21|1|5|G|3689
4W21|1|5|U|3690
4W21|1|5|G|3691
4W21|1|5|A|3692
4W21|1|5|U|3693
4W21|1|5|U|3694
4W21|1|5|U|3695
4W21|1|5|C|3696
4W21|1|5|U|3697
4W21|1|5|G|3698
*
4W21|1|5|C|3752
4W21|1|5|G|3753
4W21|1|5|G|3754
4W21|1|5|G|3755
*
4W21|1|5|C|3769
4W21|1|5|U|3770
4W21|1|5|C|3771
4W21|1|5|U|3772
4W21|1|5|U|3773
4W21|1|5|A|3774
4W21|1|5|A|3775
4W21|1|5|G|3776
4W21|1|5|G|3777
4W21|1|5|U|3778
4W21|1|5|A|3779
4W21|1|5|G|3780
*
4W21|1|5|U|3814
4W21|1|5|G|3815
4W21|1|5|A|3816
4W21|1|5|A|3817
4W21|1|5|U|3818
4W21|1|5|G|3819
4W21|1|5|G|3820
4W21|1|5|A|3821
4W21|1|5|U|3822
4W21|1|5|G|3823
4W21|1|5|A|3824
4W21|1|5|A|3825
4W21|1|5|C|3826

Current chains

Chain 5

28S ribosomal RNA

Nearby chains