J6_4XEJ_002
3D structure
- PDB id
- 4XEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IRES bound to bacterial Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 4XEJ|1|A23S|U|2076, 4XEJ|1|A23S|A|2388, 4XEJ|1|A23S|U|2390, 4XEJ|1|A23S|G|2428, 4XEJ|1|A23S|A|2430, 4XEJ|1|A23S|U|2431, 4XEJ|1|A23S|A|2434
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4XEJ|1|A23S|U|2074
4XEJ|1|A23S|U|2075
4XEJ|1|A23S|U|2076
4XEJ|1|A23S|A|2077
*
4XEJ|1|A23S|U|2243
4XEJ|1|A23S|U|2244
4XEJ|1|A23S|U|2245
4XEJ|1|A23S|G|2246
*
4XEJ|1|A23S|C|2258
4XEJ|1|A23S|G|2259
*
4XEJ|1|A23S|C|2281
4XEJ|1|A23S|G|2282
4XEJ|1|A23S|C|2283
4XEJ|1|A23S|C|2284
*
4XEJ|1|A23S|G|2384
4XEJ|1|A23S|C|2385
4XEJ|1|A23S|C|2386
4XEJ|1|A23S|U|2387
4XEJ|1|A23S|A|2388
4XEJ|1|A23S|G|2389
4XEJ|1|A23S|U|2390
4XEJ|1|A23S|G|2391
4XEJ|1|A23S|A|2392
4XEJ|1|A23S|A|2393
4XEJ|1|A23S|C|2394
4XEJ|1|A23S|C|2395
*
4XEJ|1|A23S|G|2421
4XEJ|1|A23S|A|2422
4XEJ|1|A23S|U|2423
4XEJ|1|A23S|C|2424
4XEJ|1|A23S|A|2425
4XEJ|1|A23S|A|2426
4XEJ|1|A23S|C|2427
4XEJ|1|A23S|G|2428
4XEJ|1|A23S|G|2429
4XEJ|1|A23S|A|2430
4XEJ|1|A23S|U|2431
4XEJ|1|A23S|A|2432
4XEJ|1|A23S|A|2433
4XEJ|1|A23S|A|2434
4XEJ|1|A23S|A|2435
Current chains
- Chain A23S
- 23S ribosomal RNA
Nearby chains
- Chain AL02
- 50S ribosomal protein L2
- Chain AL15
- 50S ribosomal protein L15
- Chain AL27
- 50S ribosomal protein L27
- Chain AL28
- 50S ribosomal protein L28
- Chain AL33
- 50S ribosomal protein L33
- Chain AL35
- 50S ribosomal protein L35
Coloring options: