J6_4Y4O_001

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4Y4O|1|1A|A|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Y4O|1|1A|G|44
4Y4O|1|1A|C|45
*
4Y4O|1|1A|G|168
4Y4O|1|1A|G|169
4Y4O|1|1A|A|170
4Y4O|1|1A|A|171
4Y4O|1|1A|C|172
*
4Y4O|1|1A|G|203
4Y4O|1|1A|G|204
4Y4O|1|1A|A|205
4Y4O|1|1A|G|206
4Y4O|1|1A|A|207
4Y4O|1|1A|G|208
4Y4O|1|1A|G|209
4Y4O|1|1A|A|210
4Y4O|1|1A|A|211
4Y4O|1|1A|A|212
4Y4O|1|1A|G|213
*
4Y4O|1|1A|C|220
4Y4O|1|1A|G|221
4Y4O|1|1A|A|222
4Y4O|1|1A|C|223
4Y4O|1|1A|U|224
*
4Y4O|1|1A|A|251
4Y4O|1|1A|C|252
4Y4O|1|1A|C|253
4Y4O|1|1A|A|254
4Y4O|1|1A|G|255
*
4Y4O|1|1A|C|453
4Y4O|1|1A|U|454
4Y4O|1|1A|A|455
4Y4O|1|1A|A|456
4Y4O|1|1A|G|457
4Y4O|1|1A|U|458
4Y4O|1|1A|A|459
4Y4O|1|1A|C|460

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34