J6_5AJ0_001
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGCGAC*GGAAAAGAAAC*GGAUU*AAGAG*CUAAAUACCGG*CGUC
- Length
- 42 nucleotides
- Bulged bases
- 5AJ0|1|A2|A|66, 5AJ0|1|A2|C|334
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AJ0|1|A2|G|21
5AJ0|1|A2|G|22
5AJ0|1|A2|C|23
5AJ0|1|A2|G|24
5AJ0|1|A2|A|25
5AJ0|1|A2|C|26
*
5AJ0|1|A2|G|57
5AJ0|1|A2|G|58
5AJ0|1|A2|A|59
5AJ0|1|A2|A|60
5AJ0|1|A2|A|61
5AJ0|1|A2|A|62
5AJ0|1|A2|G|63
5AJ0|1|A2|A|64
5AJ0|1|A2|A|65
5AJ0|1|A2|A|66
5AJ0|1|A2|C|67
*
5AJ0|1|A2|G|74
5AJ0|1|A2|G|75
5AJ0|1|A2|A|76
5AJ0|1|A2|U|77
5AJ0|1|A2|U|78
*
5AJ0|1|A2|A|105
5AJ0|1|A2|A|106
5AJ0|1|A2|G|107
5AJ0|1|A2|A|108
5AJ0|1|A2|G|109
*
5AJ0|1|A2|C|326
5AJ0|1|A2|U|327
5AJ0|1|A2|A|328
5AJ0|1|A2|A|329
5AJ0|1|A2|A|330
5AJ0|1|A2|U|331
5AJ0|1|A2|A|332
5AJ0|1|A2|C|333
5AJ0|1|A2|C|334
5AJ0|1|A2|G|335
5AJ0|1|A2|G|336
*
5AJ0|1|A3|C|32
5AJ0|1|A3|G|33
5AJ0|1|A3|U|34
5AJ0|1|A3|C|35
Current chains
- Chain A2
- 28S ribosomal RNA
- Chain A3
- 5.8S ribosomal RNA
Nearby chains
- Chain AC
- 60S ribosomal protein L4
- Chain AL
- 60S ribosomal protein L13
- Chain AN
- 60S ribosomal protein L15
- Chain Ah
- 60S ribosomal protein L35
- Chain Ai
- 60S ribosomal protein L36
- Chain Aj
- 60S ribosomal protein L37
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