Loop J6_5AJ0

3D structure

PDB id: 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

Loop

Sequence: UGGAUCUUGG*CCCUUG*CGUUU*AAUGGAAUAGGACC*GCCAUGAUUAAGA*UA
Length: 50 nucleotides
Bulged bases: 5AJ0|1|B1|C|741, 5AJ0|1|B1|U|871, 5AJ0|1|B1|G|873, 5AJ0|1|B1|A|913, 5AJ0|1|B1|G|921
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5AJ0|1|B1|U|682
5AJ0|1|B1|G|683
5AJ0|1|B1|G|684
5AJ0|1|B1|A|685
5AJ0|1|B1|U|686
5AJ0|1|B1|C|687
5AJ0|1|B1|U|688
5AJ0|1|B1|U|689
5AJ0|1|B1|G|690
5AJ0|1|B1|G|691
*
5AJ0|1|B1|C|739
5AJ0|1|B1|C|740
5AJ0|1|B1|C|741
5AJ0|1|B1|U|742
5AJ0|1|B1|U|743
5AJ0|1|B1|G|744
*
5AJ0|1|B1|C|797
5AJ0|1|B1|G|798
5AJ0|1|B1|U|799
5AJ0|1|B1|U|800
5AJ0|1|B1|U|801
*
5AJ0|1|B1|A|864
5AJ0|1|B1|A|865
5AJ0|1|B1|U|866
5AJ0|1|B1|G|867
5AJ0|1|B1|G|868
5AJ0|1|B1|A|869
5AJ0|1|B1|A|870
5AJ0|1|B1|U|871
5AJ0|1|B1|A|872
5AJ0|1|B1|G|873
5AJ0|1|B1|G|874
5AJ0|1|B1|A|875
5AJ0|1|B1|C|876
5AJ0|1|B1|C|877
*
5AJ0|1|B1|G|910
5AJ0|1|B1|C|911
5AJ0|1|B1|C|912
5AJ0|1|B1|A|913
5AJ0|1|B1|U|914
5AJ0|1|B1|G|915
5AJ0|1|B1|A|916
5AJ0|1|B1|U|917
5AJ0|1|B1|U|918
5AJ0|1|B1|A|919
5AJ0|1|B1|A|920
5AJ0|1|B1|G|921
5AJ0|1|B1|A|922
*
5AJ0|1|B1|U|1022
5AJ0|1|B1|A|1023

Current chains

Chain B1: 18S ribosomal RNA

Nearby chains

Chain AR: 60S ribosomal protein L19
Chain BH: 40S ribosomal protein S7
Chain BL: 40S ribosomal protein S11
Chain BN: 40S ribosomal protein S13
Chain BW: 40S ribosomal protein S15a
Chain BX: 40S ribosomal protein S23
Chain Bb: 40S ribosomal protein S27

J6_5AJ0_004