J6_5AKA_001

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5AKA|1|B|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AKA|1|B|G|45
5AKA|1|B|G|46
*
5AKA|1|B|C|179
5AKA|1|B|G|180
5AKA|1|B|A|181
5AKA|1|B|A|182
5AKA|1|B|C|183
*
5AKA|1|B|G|214
5AKA|1|B|G|215
5AKA|1|B|A|216
5AKA|1|B|A|217
5AKA|1|B|A|218
5AKA|1|B|A|219
5AKA|1|B|G|220
5AKA|1|B|A|221
5AKA|1|B|A|222
5AKA|1|B|A|223
5AKA|1|B|U|224
*
5AKA|1|B|A|231
5AKA|1|B|G|232
5AKA|1|B|A|233
5AKA|1|B|U|234
5AKA|1|B|U|235
*
5AKA|1|B|A|262
5AKA|1|B|G|263
5AKA|1|B|C|264
5AKA|1|B|A|265
5AKA|1|B|G|266
*
5AKA|1|B|C|426
5AKA|1|B|U|427
5AKA|1|B|A|428
5AKA|1|B|A|429
5AKA|1|B|A|430
5AKA|1|B|U|431
5AKA|1|B|A|432
5AKA|1|B|C|433

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34