J6_5AN9_001

3D structure

PDB id

5AN9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanism of eIF6 release from the nascent 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGUCAGAAAA

Length

38 nucleotides

Bulged bases

5AN9|1|N|G|2684, 5AN9|1|N|C|3093, 5AN9|1|N|A|3132, 5AN9|1|N|A|3134

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AN9|1|N|U|2682
5AN9|1|N|U|2683
5AN9|1|N|G|2684
5AN9|1|N|A|2685
*
5AN9|1|N|U|2944
5AN9|1|N|U|2945
5AN9|1|N|U|2946
5AN9|1|N|G|2947
*
5AN9|1|N|C|2960
5AN9|1|N|A|2961
*
5AN9|1|N|U|2983
5AN9|1|N|G|2984
5AN9|1|N|U|2985
5AN9|1|N|C|2986
*
5AN9|1|N|G|3087
5AN9|1|N|C|3088
5AN9|1|N|C|3089
5AN9|1|N|U|3090
5AN9|1|N|A|3091
5AN9|1|N|U|3092
5AN9|1|N|C|3093
5AN9|1|N|G|3094
5AN9|1|N|A|3095
5AN9|1|N|U|3096
5AN9|1|N|C|3097
5AN9|1|N|C|3098
*
5AN9|1|N|G|3126
5AN9|1|N|G|3127
5AN9|1|N|U|3128
5AN9|1|N|G|3129
5AN9|1|N|U|3130
5AN9|1|N|C|3131
5AN9|1|N|A|3132
5AN9|1|N|G|3133
5AN9|1|N|A|3134
5AN9|1|N|A|3135
5AN9|1|N|A|3136
5AN9|1|N|A|3137

Current chains

Chain N

26S RIBOSOMAL RNA

Nearby chains