Loop J6_5APN

3D structure

PDB id: 5APN (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.91 Å

Loop

Sequence: GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length: 42 nucleotides
Bulged bases: 5APN|1|5|A|67, 5APN|1|5|U|329
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5APN|1|5|G|22
5APN|1|5|A|23
5APN|1|5|G|24
5APN|1|5|U|25
5APN|1|5|A|26
5APN|1|5|C|27
*
5APN|1|5|G|58
5APN|1|5|G|59
5APN|1|5|A|60
5APN|1|5|A|61
5APN|1|5|A|62
5APN|1|5|A|63
5APN|1|5|G|64
5APN|1|5|A|65
5APN|1|5|A|66
5APN|1|5|A|67
5APN|1|5|C|68
*
5APN|1|5|G|75
5APN|1|5|G|76
5APN|1|5|A|77
5APN|1|5|U|78
5APN|1|5|U|79
*
5APN|1|5|A|106
5APN|1|5|A|107
5APN|1|5|A|108
5APN|1|5|A|109
5APN|1|5|G|110
*
5APN|1|5|C|321
5APN|1|5|U|322
5APN|1|5|A|323
5APN|1|5|A|324
5APN|1|5|A|325
5APN|1|5|U|326
5APN|1|5|A|327
5APN|1|5|U|328
5APN|1|5|U|329
5APN|1|5|G|330
5APN|1|5|G|331
*
5APN|1|8|C|32
5APN|1|8|A|33
5APN|1|8|U|34
5APN|1|8|C|35

Current chains

Chain 5: 25S rRNA
Chain 8: 5.8S rRNA

Nearby chains

Chain C: 60S ribosomal protein L4-A
Chain L: 60S ribosomal protein L13-A
Chain N: 60S ribosomal protein L15-A
Chain h: 60S ribosomal protein L35-A
Chain i: 60S ribosomal protein L36-A
Chain j: 60S ribosomal protein L37-A

J6_5APN_001