J6_5APN_002
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 5APN|1|5|G|2418, 5APN|1|5|A|2799, 5APN|1|5|A|2801
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5APN|1|5|U|2416
5APN|1|5|U|2417
5APN|1|5|G|2418
5APN|1|5|A|2419
*
5APN|1|5|U|2611
5APN|1|5|U|2612
5APN|1|5|U|2613
5APN|1|5|G|2614
*
5APN|1|5|C|2627
5APN|1|5|A|2628
*
5APN|1|5|U|2650
5APN|1|5|G|2651
5APN|1|5|U|2652
5APN|1|5|C|2653
*
5APN|1|5|G|2754
5APN|1|5|C|2755
5APN|1|5|C|2756
5APN|1|5|U|2757
5APN|1|5|A|2758
5APN|1|5|U|2759
5APN|1|5|C|2760
5APN|1|5|G|2761
5APN|1|5|A|2762
5APN|1|5|U|2763
5APN|1|5|C|2764
5APN|1|5|C|2765
*
5APN|1|5|G|2793
5APN|1|5|G|2794
5APN|1|5|U|2795
5APN|1|5|G|2796
5APN|1|5|C|2797
5APN|1|5|C|2798
5APN|1|5|A|2799
5APN|1|5|G|2800
5APN|1|5|A|2801
5APN|1|5|A|2802
5APN|1|5|A|2803
5APN|1|5|A|2804
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain N
- 60S ribosomal protein L15-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain T
- 60S ribosomal protein L21-A
- Chain a
- 60S ribosomal protein L28
- Chain b
- 60S ribosomal protein L29
- Chain o
- 60S ribosomal protein L42-A
Coloring options: