J6_5D8B_001

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5D8B|1|VC|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5D8B|1|VC|G|45
5D8B|1|VC|C|46
*
5D8B|1|VC|G|179
5D8B|1|VC|G|180
5D8B|1|VC|A|181
5D8B|1|VC|A|182
5D8B|1|VC|C|183
*
5D8B|1|VC|G|214
5D8B|1|VC|G|215
5D8B|1|VC|A|216
5D8B|1|VC|G|217
5D8B|1|VC|A|218
5D8B|1|VC|G|219
5D8B|1|VC|G|220
5D8B|1|VC|A|221
5D8B|1|VC|A|222
5D8B|1|VC|A|223
5D8B|1|VC|G|224
*
5D8B|1|VC|C|231
5D8B|1|VC|G|232
5D8B|1|VC|A|233
5D8B|1|VC|C|234
5D8B|1|VC|U|235
*
5D8B|1|VC|A|262
5D8B|1|VC|C|263
5D8B|1|VC|C|264
5D8B|1|VC|A|265
5D8B|1|VC|G|266
*
5D8B|1|VC|C|426
5D8B|1|VC|U|427
5D8B|1|VC|A|428
5D8B|1|VC|A|429
5D8B|1|VC|G|430
5D8B|1|VC|U|431
5D8B|1|VC|A|432
5D8B|1|VC|C|433

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain AA

50S ribosomal protein L34