J6_5DM6_001

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GC*GGAAC*GGAGAAGAAAG*CGAUU*AUCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5DM6|1|X|A|195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DM6|1|X|G|45
5DM6|1|X|C|46
*
5DM6|1|X|G|158
5DM6|1|X|G|159
5DM6|1|X|A|160
5DM6|1|X|A|161
5DM6|1|X|C|162
*
5DM6|1|X|G|186
5DM6|1|X|G|187
5DM6|1|X|A|188
5DM6|1|X|G|189
5DM6|1|X|A|190
5DM6|1|X|A|191
5DM6|1|X|G|192
5DM6|1|X|A|193
5DM6|1|X|A|194
5DM6|1|X|A|195
5DM6|1|X|G|196
*
5DM6|1|X|C|203
5DM6|1|X|G|204
5DM6|1|X|A|205
5DM6|1|X|U|206
5DM6|1|X|U|207
*
5DM6|1|X|A|234
5DM6|1|X|U|235
5DM6|1|X|C|236
5DM6|1|X|A|237
5DM6|1|X|G|238
*
5DM6|1|X|C|426
5DM6|1|X|U|427
5DM6|1|X|A|428
5DM6|1|X|A|429
5DM6|1|X|A|430
5DM6|1|X|U|431
5DM6|1|X|A|432
5DM6|1|X|C|433

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34