J6_5GAE_001

3D structure

PDB id

5GAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with a translocating SecYEG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5GAE|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GAE|1|A|G|45
5GAE|1|A|G|46
*
5GAE|1|A|C|179
5GAE|1|A|G|180
5GAE|1|A|A|181
5GAE|1|A|A|182
5GAE|1|A|C|183
*
5GAE|1|A|G|214
5GAE|1|A|G|215
5GAE|1|A|A|216
5GAE|1|A|A|217
5GAE|1|A|A|218
5GAE|1|A|A|219
5GAE|1|A|G|220
5GAE|1|A|A|221
5GAE|1|A|A|222
5GAE|1|A|A|223
5GAE|1|A|U|224
*
5GAE|1|A|A|231
5GAE|1|A|G|232
5GAE|1|A|A|233
5GAE|1|A|U|234
5GAE|1|A|U|235
*
5GAE|1|A|A|262
5GAE|1|A|G|263
5GAE|1|A|C|264
5GAE|1|A|A|265
5GAE|1|A|G|266
*
5GAE|1|A|C|426
5GAE|1|A|U|427
5GAE|1|A|A|428
5GAE|1|A|A|429
5GAE|1|A|A|430
5GAE|1|A|U|431
5GAE|1|A|A|432
5GAE|1|A|C|433

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34