J6_5HCR_003

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5HCR|1|2A|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCR|1|2A|G|43
5HCR|1|2A|C|44
*
5HCR|1|2A|G|167
5HCR|1|2A|G|168
5HCR|1|2A|A|169
5HCR|1|2A|A|170
5HCR|1|2A|C|171
*
5HCR|1|2A|G|202
5HCR|1|2A|G|203
5HCR|1|2A|A|204
5HCR|1|2A|G|205
5HCR|1|2A|A|206
5HCR|1|2A|G|207
5HCR|1|2A|G|208
5HCR|1|2A|A|209
5HCR|1|2A|A|210
5HCR|1|2A|A|211
5HCR|1|2A|G|212
*
5HCR|1|2A|C|219
5HCR|1|2A|G|220
5HCR|1|2A|A|221
5HCR|1|2A|C|222
5HCR|1|2A|U|223
*
5HCR|1|2A|A|250
5HCR|1|2A|C|251
5HCR|1|2A|C|252
5HCR|1|2A|A|253
5HCR|1|2A|G|254
*
5HCR|1|2A|C|452
5HCR|1|2A|U|453
5HCR|1|2A|A|454
5HCR|1|2A|A|455
5HCR|1|2A|G|456
5HCR|1|2A|U|457
5HCR|1|2A|A|458
5HCR|1|2A|C|459

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34