J6_5IT8_003

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5IT8|1|DA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IT8|1|DA|G|45
5IT8|1|DA|G|46
*
5IT8|1|DA|C|179
5IT8|1|DA|G|180
5IT8|1|DA|A|181
5IT8|1|DA|A|182
5IT8|1|DA|C|183
*
5IT8|1|DA|G|214
5IT8|1|DA|G|215
5IT8|1|DA|A|216
5IT8|1|DA|A|217
5IT8|1|DA|A|218
5IT8|1|DA|A|219
5IT8|1|DA|G|220
5IT8|1|DA|A|221
5IT8|1|DA|A|222
5IT8|1|DA|A|223
5IT8|1|DA|U|224
*
5IT8|1|DA|A|231
5IT8|1|DA|G|232
5IT8|1|DA|A|233
5IT8|1|DA|U|234
5IT8|1|DA|U|235
*
5IT8|1|DA|A|262
5IT8|1|DA|G|263
5IT8|1|DA|C|264
5IT8|1|DA|A|265
5IT8|1|DA|G|266
*
5IT8|1|DA|C|426
5IT8|1|DA|U|427
5IT8|1|DA|A|428
5IT8|1|DA|A|429
5IT8|1|DA|A|430
5IT8|1|DA|U|431
5IT8|1|DA|A|432
5IT8|1|DA|C|433

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L34