J6_5J7L_003

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5J7L|1|DA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J6_45299.4

Basepair signature

cWW-cSS-cWW-cSS-tWW-F-tWW-F-F-cWW-tSS-tHW-cWW-cWW-cSS-F-F-tHS-F-cWW-cSS-cSS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5J7L|1|DA|G|45
5J7L|1|DA|G|46
*
5J7L|1|DA|C|179
5J7L|1|DA|G|180
5J7L|1|DA|A|181
5J7L|1|DA|A|182
5J7L|1|DA|C|183
*
5J7L|1|DA|G|214
5J7L|1|DA|G|215
5J7L|1|DA|A|216
5J7L|1|DA|A|217
5J7L|1|DA|A|218
5J7L|1|DA|A|219
5J7L|1|DA|G|220
5J7L|1|DA|A|221
5J7L|1|DA|A|222
5J7L|1|DA|A|223
5J7L|1|DA|U|224
*
5J7L|1|DA|A|231
5J7L|1|DA|G|232
5J7L|1|DA|A|233
5J7L|1|DA|U|234
5J7L|1|DA|U|235
*
5J7L|1|DA|A|262
5J7L|1|DA|G|263
5J7L|1|DA|C|264
5J7L|1|DA|A|265
5J7L|1|DA|G|266
*
5J7L|1|DA|C|426
5J7L|1|DA|U|427
5J7L|1|DA|A|428
5J7L|1|DA|A|429
5J7L|1|DA|A|430
5J7L|1|DA|U|431
5J7L|1|DA|A|432
5J7L|1|DA|C|433

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L34