Motif J6_45299.4 Version J6_45299.4 of this group appears in releases 3.91 to 3.97

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2	break		3		4		5		6		7	break		8		9		10		11		12		13		14		15		16		17	break		18		19		20		21		22	break		23		24		25		26		27	break		28		29		30		31		32		33		34	1-5	1-34	2-3	6-9	6-34	7-8	7-33	8-10	13-21	13-32	14-20	15-29	16-19	17-18	20-31	21-24	21-32	22-23	24-31	26-29	27-28
1	J6_9DFE_001	9DFE	0.1137	2	1A	LSU rRNA	G	44	C	45	*	G	179	G	180	A	181	A	182	C	183	*	G	214	G	215	A	216	G	217	A	218	G	219	G	220	A	221	A	222	G	224	*	C	231	G	232	A	233	C	234	U	235	*	A	262	C	263	C	264	A	265	G	266	*	C	426	U	427	A	428	A	429	G	430	A	432	C	433		cWW	cWW	cWW	csS	cWW	cSs	csS	csS	ntSH	cSs	tHW	tHS	cWW	tWW		tWW	cWW		tSs	cWW
2	J6_4V9F_001	4V9F	0.0000	2	0	LSU rRNA	G	41	C	42	*	G	149	G	150	A	151	A	152	C	153	*	G	184	G	185	A	186	A	187	C	188	A	189	G	190	A	191	A	192	A	194	*	U	202	G	203	A	204	U	205	G	206	*	U	233	A	234	C	235	A	236	G	237	*	C	433	U	434	A	435	A	436	A	437	A	439	C	440		cWW	cWW	cWW	csS	cWW	cSs	ncsS	csS		cSs	tHW	tHS	cWW	tWW	ntHS	tWW	cWW	ncSs	tSs	cWW
3	J6_5J7L_003	5J7L	0.1833	2	DA	LSU rRNA	G	45	G	46	*	C	179	G	180	A	181	A	182	C	183	*	G	214	G	215	A	216	A	217	A	218	A	219	G	220	A	221	A	222	U	224	*	A	231	G	232	A	233	U	234	U	235	*	A	262	G	263	C	264	A	265	G	266	*	C	426	U	427	A	428	A	429	A	430	A	432	C	433	ntSW	cWW	cWW	cWW	csS	cWW	cSs	ncsS	csS		cSs	tHW	tHS	cWW	tWW	ntHS	tWW	cWW	ncSs	tSs	cWW
4	J6_4WF9_001	4WF9	0.1938	3	X	LSU rRNA	G	45	C	46	*	G	181	C	182	A	183	A	185	C	186	*	G	217	G	218	A	219	A	220	G	221	A	222	G	223	A	224	A	225	G	227	*	C	234	G	235	A	236	U	237	U	238	*	A	265	A	266	G	267	A	268	G	269	*	C	472	U	473	A	474	A	475	A	476	A	478	C	479	tSW	cWW	cWW	cWW	csS	cWW	cSs	ncsS	csS		cSs	tHW	ntHS	cWW	tWW	tHS	tWW	cWW	ncSs	ntHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCGGAACGGAGAGGAAAGCGACUACCAGCUAAGUAC	1
GCGGAACGGAACAGAAAAUGAUGUACAGCUAAACAC	1
GGCGAACGGAAAAGAAAUAGAUUAGCAGCUAAAUAC	1
GCGCACACGGAAGAGAAAGCGAUUAAGAGCUAAAUAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAGAGAGGAAAGACCCAUAAGUA	1
GAAGAACAGAAAGAUACAUAAACA	1
GAAGAAAAGAAAGAUGCAUAAAUA	1
CACAGAAGAGAAAGAUAGAUAAAUA	1

Release history

Release	3.91	3.92	3.93	3.94	3.95	3.96	3.97
Date	2024-12-04	2025-01-01	2025-01-29	2025-02-26	2025-03-26	2025-04-23	2025-05-21
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (4)
Basepair signature: cWW-cSS-cWW-cSS-tWW-F-tWW-F-F-cWW-tSS-tHW-cWW-cWW-cSS-F-F-tHS-F-cWW-cSS-cSS-tHS-cWW
Heat map statistics: Min 0.11 | Avg 0.13 | Max 0.20

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Coloring options: Nucleotide numbers

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