J6_5J8B_001

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5J8B|1|A|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J8B|1|A|G|43
5J8B|1|A|C|44
*
5J8B|1|A|G|167
5J8B|1|A|G|168
5J8B|1|A|A|169
5J8B|1|A|A|170
5J8B|1|A|C|171
*
5J8B|1|A|G|202
5J8B|1|A|G|203
5J8B|1|A|A|204
5J8B|1|A|G|205
5J8B|1|A|A|206
5J8B|1|A|G|207
5J8B|1|A|G|208
5J8B|1|A|A|209
5J8B|1|A|A|210
5J8B|1|A|A|211
5J8B|1|A|G|212
*
5J8B|1|A|C|219
5J8B|1|A|G|220
5J8B|1|A|A|221
5J8B|1|A|C|222
5J8B|1|A|U|223
*
5J8B|1|A|A|250
5J8B|1|A|C|251
5J8B|1|A|C|252
5J8B|1|A|A|253
5J8B|1|A|G|254
*
5J8B|1|A|C|452
5J8B|1|A|U|453
5J8B|1|A|A|454
5J8B|1|A|A|455
5J8B|1|A|G|456
5J8B|1|A|U|457
5J8B|1|A|A|458
5J8B|1|A|C|459

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34