J6_5JCS_001
3D structure
- PDB id
- 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- UGCCGAAGUUUC*GAUAGCA*UAGUGGG*CGAUGCGGGAUGAACCGAACG*CC*GAGUAGGCA
- Length
- 58 nucleotides
- Bulged bases
- 5JCS|1|x|G|1115, 5JCS|1|x|G|1116, 5JCS|1|x|A|1153, 5JCS|1|x|A|1154, 5JCS|1|x|A|1159, 5JCS|1|x|A|1366
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JCS|1|x|U|946
5JCS|1|x|G|947
5JCS|1|x|C|948
5JCS|1|x|C|949
5JCS|1|x|G|950
5JCS|1|x|A|951
5JCS|1|x|A|952
5JCS|1|x|G|953
5JCS|1|x|U|954
5JCS|1|x|U|955
5JCS|1|x|U|956
5JCS|1|x|C|957
*
5JCS|1|x|G|964
5JCS|1|x|A|965
5JCS|1|x|U|966
5JCS|1|x|A|967
5JCS|1|x|G|968
5JCS|1|x|C|969
5JCS|1|x|A|970
*
5JCS|1|x|U|1111
5JCS|1|x|A|1112
5JCS|1|x|G|1113
5JCS|1|x|U|1114
5JCS|1|x|G|1115
5JCS|1|x|G|1116
5JCS|1|x|G|1117
*
5JCS|1|x|C|1141
5JCS|1|x|G|1142
5JCS|1|x|A|1143
5JCS|1|x|U|1144
5JCS|1|x|G|1145
5JCS|1|x|C|1146
5JCS|1|x|G|1147
5JCS|1|x|G|1148
5JCS|1|x|G|1149
5JCS|1|x|A|1150
5JCS|1|x|U|1151
5JCS|1|x|G|1152
5JCS|1|x|A|1153
5JCS|1|x|A|1154
5JCS|1|x|C|1155
5JCS|1|x|C|1156
5JCS|1|x|G|1157
5JCS|1|x|A|1158
5JCS|1|x|A|1159
5JCS|1|x|C|1160
5JCS|1|x|G|1161
*
5JCS|1|x|C|1338
5JCS|1|x|C|1339
*
5JCS|1|x|G|1365
5JCS|1|x|A|1366
5JCS|1|x|G|1367
5JCS|1|x|U|1368
5JCS|1|x|A|1369
5JCS|1|x|G|1370
5JCS|1|x|G|1371
5JCS|1|x|C|1372
5JCS|1|x|A|1373
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L7-A
- Chain L
- 60S ribosomal protein L13-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain T
- 60S ribosomal protein L21-A
- Chain a
- 60S ribosomal protein L28
- Chain e
- 60S ribosomal protein L32
- Chain f
- 60S ribosomal protein L33-A
- Chain z
- 5S ribosomal RNA; 5S rRNA
Coloring options: