Loop J6_5JCS

3D structure

PDB id: 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
Description: CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.5 Å

Loop

Sequence: GCUUGACUC*GAGUUUGGCUGGGGCGGCACAUCUGUUAAACGAUAACGCAGAUGUCCUAAGGGGGGCUCAUGGAG*CUCCAGUAGAACAAAAGGGUAAAAGCCCCCUUGAUU*ACC*GUGGCCUAUCGAUCCU*AGGUGCCAGAAAAGUU
Length: 145 nucleotides
Bulged bases: 5JCS|1|x|G|2418, 5JCS|1|x|U|2613, 5JCS|1|x|U|2617, 5JCS|1|x|G|2618, 5JCS|1|x|A|2626, 5JCS|1|x|C|2627, 5JCS|1|x|A|2628, 5JCS|1|x|U|2629, 5JCS|1|x|A|2636, 5JCS|1|x|A|2637, 5JCS|1|x|C|2638, 5JCS|1|x|G|2651, 5JCS|1|x|U|2652, 5JCS|1|x|U|2655, 5JCS|1|x|A|2657, 5JCS|1|x|U|2688, 5JCS|1|x|A|2703, 5JCS|1|x|U|2752, 5JCS|1|x|U|2759, 5JCS|1|x|C|2760, 5JCS|1|x|G|2761, 5JCS|1|x|G|2794, 5JCS|1|x|U|2795, 5JCS|1|x|C|2797, 5JCS|1|x|A|2799, 5JCS|1|x|A|2801, 5JCS|1|x|A|2802
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5JCS|1|x|G|2414
5JCS|1|x|C|2415
5JCS|1|x|U|2416
5JCS|1|x|U|2417
5JCS|1|x|G|2418
5JCS|1|x|A|2419
5JCS|1|x|C|2420
5JCS|1|x|U|2421
5JCS|1|x|C|2422
*
5JCS|1|x|G|2608
5JCS|1|x|A|2609
5JCS|1|x|G|2610
5JCS|1|x|U|2611
5JCS|1|x|U|2612
5JCS|1|x|U|2613
5JCS|1|x|G|2614
5JCS|1|x|G|2615
5JCS|1|x|C|2616
5JCS|1|x|U|2617
5JCS|1|x|G|2618
5JCS|1|x|G|2619
5JCS|1|x|G|2620
5JCS|1|x|G|2621
5JCS|1|x|C|2622
5JCS|1|x|G|2623
5JCS|1|x|G|2624
5JCS|1|x|C|2625
5JCS|1|x|A|2626
5JCS|1|x|C|2627
5JCS|1|x|A|2628
5JCS|1|x|U|2629
5JCS|1|x|C|2630
5JCS|1|x|U|2631
5JCS|1|x|G|2632
5JCS|1|x|U|2633
5JCS|1|x|U|2634
5JCS|1|x|A|2635
5JCS|1|x|A|2636
5JCS|1|x|A|2637
5JCS|1|x|C|2638
5JCS|1|x|G|2639
5JCS|1|x|A|2640
5JCS|1|x|U|2641
5JCS|1|x|A|2642
5JCS|1|x|A|2643
5JCS|1|x|C|2644
5JCS|1|x|G|2645
5JCS|1|x|C|2646
5JCS|1|x|A|2647
5JCS|1|x|G|2648
5JCS|1|x|A|2649
5JCS|1|x|U|2650
5JCS|1|x|G|2651
5JCS|1|x|U|2652
5JCS|1|x|C|2653
5JCS|1|x|C|2654
5JCS|1|x|U|2655
5JCS|1|x|A|2656
5JCS|1|x|A|2657
5JCS|1|x|G|2658
5JCS|1|x|G|2659
5JCS|1|x|G|2660
5JCS|1|x|G|2661
5JCS|1|x|G|2662
5JCS|1|x|G|2663
5JCS|1|x|C|2664
5JCS|1|x|U|2665
5JCS|1|x|C|2666
5JCS|1|x|A|2667
5JCS|1|x|U|2668
5JCS|1|x|G|2669
5JCS|1|x|G|2670
5JCS|1|x|A|2671
5JCS|1|x|G|2672
*
5JCS|1|x|C|2682
5JCS|1|x|U|2683
5JCS|1|x|C|2684
5JCS|1|x|C|2685
5JCS|1|x|A|2686
5JCS|1|x|G|2687
5JCS|1|x|U|2688
5JCS|1|x|A|2689
5JCS|1|x|G|2690
5JCS|1|x|A|2691
5JCS|1|x|A|2692
5JCS|1|x|C|2693
5JCS|1|x|A|2694
5JCS|1|x|A|2695
5JCS|1|x|A|2696
5JCS|1|x|A|2697
5JCS|1|x|G|2698
5JCS|1|x|G|2699
5JCS|1|x|G|2700
5JCS|1|x|U|2701
5JCS|1|x|A|2702
5JCS|1|x|A|2703
5JCS|1|x|A|2704
5JCS|1|x|A|2705
5JCS|1|x|G|2706
5JCS|1|x|C|2707
5JCS|1|x|C|2708
5JCS|1|x|C|2709
5JCS|1|x|C|2710
5JCS|1|x|C|2711
5JCS|1|x|U|2712
5JCS|1|x|U|2713
5JCS|1|x|G|2714
5JCS|1|x|A|2715
5JCS|1|x|U|2716
5JCS|1|x|U|2717
*
5JCS|1|x|A|2740
5JCS|1|x|C|2741
5JCS|1|x|C|2742
*
5JCS|1|x|G|2751
5JCS|1|x|U|2752
5JCS|1|x|G|2753
5JCS|1|x|G|2754
5JCS|1|x|C|2755
5JCS|1|x|C|2756
5JCS|1|x|U|2757
5JCS|1|x|A|2758
5JCS|1|x|U|2759
5JCS|1|x|C|2760
5JCS|1|x|G|2761
5JCS|1|x|A|2762
5JCS|1|x|U|2763
5JCS|1|x|C|2764
5JCS|1|x|C|2765
5JCS|1|x|U|2766
*
5JCS|1|x|A|2792
5JCS|1|x|G|2793
5JCS|1|x|G|2794
5JCS|1|x|U|2795
5JCS|1|x|G|2796
5JCS|1|x|C|2797
5JCS|1|x|C|2798
5JCS|1|x|A|2799
5JCS|1|x|G|2800
5JCS|1|x|A|2801
5JCS|1|x|A|2802
5JCS|1|x|A|2803
5JCS|1|x|A|2804
5JCS|1|x|G|2805
5JCS|1|x|U|2806
5JCS|1|x|U|2807

Current chains

Chain x: 25S ribosomal RNA

Nearby chains

Chain A: 60S ribosomal protein L2-A
Chain D: 60S ribosomal protein L5
Chain I: 60S ribosomal protein L1-A
Chain J: 60S ribosomal protein L11-A
Chain N: 60S ribosomal protein L15-A
Chain Q: 60S ribosomal protein L18-A
Chain T: 60S ribosomal protein L21-A
Chain a: 60S ribosomal protein L28
Chain r: Protein SDA1
Chain z: 5S ribosomal RNA; 5S rRNA

J6_5JCS_005