J6_5JUP_001
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 5JUP|1|B|A|67, 5JUP|1|B|U|329
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUP|1|B|G|22
5JUP|1|B|A|23
5JUP|1|B|G|24
5JUP|1|B|U|25
5JUP|1|B|A|26
5JUP|1|B|C|27
*
5JUP|1|B|G|58
5JUP|1|B|G|59
5JUP|1|B|A|60
5JUP|1|B|A|61
5JUP|1|B|A|62
5JUP|1|B|A|63
5JUP|1|B|G|64
5JUP|1|B|A|65
5JUP|1|B|A|66
5JUP|1|B|A|67
5JUP|1|B|C|68
*
5JUP|1|B|G|75
5JUP|1|B|G|76
5JUP|1|B|A|77
5JUP|1|B|U|78
5JUP|1|B|U|79
*
5JUP|1|B|A|106
5JUP|1|B|A|107
5JUP|1|B|A|108
5JUP|1|B|A|109
5JUP|1|B|G|110
*
5JUP|1|B|C|321
5JUP|1|B|U|322
5JUP|1|B|A|323
5JUP|1|B|A|324
5JUP|1|B|A|325
5JUP|1|B|U|326
5JUP|1|B|A|327
5JUP|1|B|U|328
5JUP|1|B|U|329
5JUP|1|B|G|330
5JUP|1|B|G|331
*
5JUP|1|C|C|32
5JUP|1|C|A|33
5JUP|1|C|U|34
5JUP|1|C|C|35
Current chains
- Chain B
- 25S ribosomal RNA
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain H
- uL4 (yeast L4)
- Chain MA
- uL29 (yeast L35)
- Chain NA
- eL36 (yeast L36)
- Chain OA
- eL37 (yeast L37)
- Chain Q
- eL13 (yeast L13)
- Chain S
- eL15 (yeast L15)
Coloring options: