J6_5KCR_001

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5KCR|1|1A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KCR|1|1A|G|45
5KCR|1|1A|G|46
*
5KCR|1|1A|C|179
5KCR|1|1A|G|180
5KCR|1|1A|A|181
5KCR|1|1A|A|182
5KCR|1|1A|C|183
*
5KCR|1|1A|G|214
5KCR|1|1A|G|215
5KCR|1|1A|A|216
5KCR|1|1A|A|217
5KCR|1|1A|A|218
5KCR|1|1A|A|219
5KCR|1|1A|G|220
5KCR|1|1A|A|221
5KCR|1|1A|A|222
5KCR|1|1A|A|223
5KCR|1|1A|U|224
*
5KCR|1|1A|A|231
5KCR|1|1A|G|232
5KCR|1|1A|A|233
5KCR|1|1A|U|234
5KCR|1|1A|U|235
*
5KCR|1|1A|A|262
5KCR|1|1A|G|263
5KCR|1|1A|C|264
5KCR|1|1A|A|265
5KCR|1|1A|G|266
*
5KCR|1|1A|C|426
5KCR|1|1A|U|427
5KCR|1|1A|A|428
5KCR|1|1A|A|429
5KCR|1|1A|A|430
5KCR|1|1A|U|431
5KCR|1|1A|A|432
5KCR|1|1A|C|433

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34