Loop J6_5KCR

3D structure

PDB id: 5KCR (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å

Loop

Sequence: UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length: 41 nucleotides
Bulged bases: 5KCR|1|1A|U|2076, 5KCR|1|1A|A|2388, 5KCR|1|1A|U|2390, 5KCR|1|1A|G|2428, 5KCR|1|1A|A|2430||A, 5KCR|1|1A|U|2431
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5KCR|1|1A|U|2074
5KCR|1|1A|U|2075
5KCR|1|1A|U|2076
5KCR|1|1A|A|2077
*
5KCR|1|1A|U|2243
5KCR|1|1A|U|2244
5KCR|1|1A|U|2245
5KCR|1|1A|G|2246
*
5KCR|1|1A|C|2258
5KCR|1|1A|U|2259
*
5KCR|1|1A|A|2281
5KCR|1|1A|G|2282
5KCR|1|1A|C|2283
5KCR|1|1A|A|2284
*
5KCR|1|1A|U|2384
5KCR|1|1A|C|2385
5KCR|1|1A|A|2386
5KCR|1|1A|U|2387
5KCR|1|1A|A|2388
5KCR|1|1A|G|2389
5KCR|1|1A|U|2390
5KCR|1|1A|G|2391
5KCR|1|1A|A|2392
5KCR|1|1A|U|2393
5KCR|1|1A|C|2394
5KCR|1|1A|C|2395
*
5KCR|1|1A|G|2421
5KCR|1|1A|C|2422
5KCR|1|1A|U|2423
5KCR|1|1A|C|2424
5KCR|1|1A|A|2425
5KCR|1|1A|A|2426
5KCR|1|1A|C|2427
5KCR|1|1A|G|2428
5KCR|1|1A|G|2429||A
5KCR|1|1A|A|2430||A
5KCR|1|1A|U|2431
5KCR|1|1A|A|2432
5KCR|1|1A|A|2433
5KCR|1|1A|A|2434
5KCR|1|1A|A|2435

Current chains

Chain 1A: 23S Ribosomal RNA

Nearby chains

Chain 10: 50S ribosomal protein L27
Chain 11: 50S ribosomal protein L28
Chain 16: 50S ribosomal protein L33
Chain 18: 50S ribosomal protein L35
Chain 1D: 50S ribosomal protein L2
Chain 1P: 50S ribosomal protein L15

J6_5KCR_002