J6_5KPS_001

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5KPS|1|28|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KPS|1|28|G|45
5KPS|1|28|G|46
*
5KPS|1|28|C|179
5KPS|1|28|G|180
5KPS|1|28|A|181
5KPS|1|28|A|182
5KPS|1|28|C|183
*
5KPS|1|28|G|214
5KPS|1|28|G|215
5KPS|1|28|A|216
5KPS|1|28|A|217
5KPS|1|28|A|218
5KPS|1|28|A|219
5KPS|1|28|G|220
5KPS|1|28|A|221
5KPS|1|28|A|222
5KPS|1|28|A|223
5KPS|1|28|U|224
*
5KPS|1|28|A|231
5KPS|1|28|G|232
5KPS|1|28|A|233
5KPS|1|28|U|234
5KPS|1|28|U|235
*
5KPS|1|28|A|262
5KPS|1|28|G|263
5KPS|1|28|C|264
5KPS|1|28|A|265
5KPS|1|28|G|266
*
5KPS|1|28|C|426
5KPS|1|28|U|427
5KPS|1|28|A|428
5KPS|1|28|A|429
5KPS|1|28|A|430
5KPS|1|28|U|431
5KPS|1|28|A|432
5KPS|1|28|C|433

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L34