J6_5LZB_001

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5LZB|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZB|1|A|G|45
5LZB|1|A|G|46
*
5LZB|1|A|C|179
5LZB|1|A|G|180
5LZB|1|A|A|181
5LZB|1|A|A|182
5LZB|1|A|C|183
*
5LZB|1|A|G|214
5LZB|1|A|G|215
5LZB|1|A|A|216
5LZB|1|A|A|217
5LZB|1|A|A|218
5LZB|1|A|A|219
5LZB|1|A|G|220
5LZB|1|A|A|221
5LZB|1|A|A|222
5LZB|1|A|A|223
5LZB|1|A|U|224
*
5LZB|1|A|A|231
5LZB|1|A|G|232
5LZB|1|A|A|233
5LZB|1|A|U|234
5LZB|1|A|U|235
*
5LZB|1|A|A|262
5LZB|1|A|G|263
5LZB|1|A|C|264
5LZB|1|A|A|265
5LZB|1|A|G|266
*
5LZB|1|A|C|426
5LZB|1|A|U|427
5LZB|1|A|A|428
5LZB|1|A|A|429
5LZB|1|A|A|430
5LZB|1|A|U|431
5LZB|1|A|A|432
5LZB|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34