3D structure

PDB id
5LZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
5LZB|1|A|U|2076, 5LZB|1|A|A|2388, 5LZB|1|A|U|2390, 5LZB|1|A|G|2428, 5LZB|1|A|A|2430, 5LZB|1|A|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5LZB|1|A|U|2074
5LZB|1|A|U|2075
5LZB|1|A|U|2076
5LZB|1|A|A|2077
*
5LZB|1|A|U|2243
5LZB|1|A|U|2244
5LZB|1|A|U|2245
5LZB|1|A|G|2246
*
5LZB|1|A|C|2258
5LZB|1|A|U|2259
*
5LZB|1|A|A|2281
5LZB|1|A|G|2282
5LZB|1|A|C|2283
5LZB|1|A|A|2284
*
5LZB|1|A|U|2384
5LZB|1|A|C|2385
5LZB|1|A|A|2386
5LZB|1|A|U|2387
5LZB|1|A|A|2388
5LZB|1|A|G|2389
5LZB|1|A|U|2390
5LZB|1|A|G|2391
5LZB|1|A|A|2392
5LZB|1|A|U|2393
5LZB|1|A|C|2394
5LZB|1|A|C|2395
*
5LZB|1|A|G|2421
5LZB|1|A|C|2422
5LZB|1|A|U|2423
5LZB|1|A|C|2424
5LZB|1|A|A|2425
5LZB|1|A|A|2426
5LZB|1|A|C|2427
5LZB|1|A|G|2428
5LZB|1|A|G|2429
5LZB|1|A|A|2430
5LZB|1|A|U|2431
5LZB|1|A|A|2432
5LZB|1|A|A|2433
5LZB|1|A|A|2434
5LZB|1|A|A|2435

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 1
50S ribosomal protein L33
Chain 3
50S ribosomal protein L35
Chain C
50S ribosomal protein L2
Chain L
50S ribosomal protein L15
Chain W
50S ribosomal protein L27
Chain X
50S ribosomal protein L28
Chain w
CCA 3' end of E-site tRNASec (low occupancy)

Coloring options:

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